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rosetta-mcp-server

MCP Server

Rosetta/PyRosetta protein modeling and Biotite translation for computational biology

17Science

Install

claude mcp add rosetta-mcp-server -- npx -y rosetta-mcp-server

What is rosetta-mcp-server?

Rosetta/PyRosetta protein modeling and Biotite translation for computational biology

Trust

61/100 · Good

4 factors scored below maximum

No license

Documentation

README · ~7 min read

Rosetta MCP Server

Rosetta MCP Server

Author: Ariel J. Ben-Sasson

A Model Context Protocol (MCP) server that lets Cursor (or any MCP client) work with Rosetta, PyRosetta, and Biotite: run RosettaScripts, validate XML protocols, translate between Rosetta and Biotite, score structures, and query documentation -- all from your AI coding assistant.

What's new in v1.3.0 (vs v1.1.8 on npm)

New: Biotite integration

  • rosetta_to_biotite -- Find the Biotite equivalent of any Rosetta function with working example code (21 mappings covering structure I/O, SASA, RMSD, superimposition, secondary structure, contacts, hydrogen bonds, B-factors, angles, and more)
  • biotite_to_rosetta -- Reverse lookup: find the Rosetta equivalent of a Biotite function
  • translate_rosetta_script_to_biotite -- Translate entire RosettaScripts XML or PyRosetta code to Biotite Python. Design/optimization operations are flagged as Rosetta-only.
  • Fuzzy search with keyword aliases ("contacts", "binding energy", "surface area", "align", etc.)

Improved: XML to PyRosetta translator

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