Monarch Initiative
MCP ServerMonarch biomedical knowledge graph — diseases, phenotypes, genes, variants
Install
claude mcp add --transport http monarch-initiative https://gateway.pipeworx.io/monarch-initiative/mcpWhat is Monarch Initiative?
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
Trust
74/100 · Good3 factors scored below maximum
Documentation
README · ~1 min readmcp-monarch-initiative
Monarch Initiative MCP — biomedical knowledge graph.
Part of Pipeworx — an MCP gateway connecting AI agents to 673+ live data sources.
Tools
| Tool | Description |
|---|---|
search | Full-text node search. |
entity | Single node by curie (e.g. "MONDO:0007947"). |
associations | Associations involving an entity. |
phenotype_to_gene | Genes annotated to a phenotype (HP:… id). |
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